I found out my accountant hasn't been doing his job. He hasn't even filed my taxes for three years. Am I on the hook for penalties?

I found out my accountant hasn't been doing his job. He hasn't even filed my taxes for three years. Am I on the hook for penalties?


November 21, 2025 | Jane O'Shea

I found out my accountant hasn't been doing his job. He hasn't even filed my taxes for three years. Am I on the hook for penalties?


1Mikhail Nilov, Pexels

Finding out your taxes haven’t been filed hits like cold water down your back. The air gets tight. Your mind jumps straight to the IRS knocking on your door or your refund disappearing. But here’s the real kicker: even when an accountant drops the ball, the IRS sees you as the taxpayer of record. That means your next steps matter far more than their excuses. 

Ready to get clarity and take back control? Let’s walk through what the law actually says and what you can do right now.

Who The IRS Holds Responsible (And It’s Not Your Accountant)

In tax law, responsibility doesn’t transfer. The IRS views the taxpayer—not the preparer—as the person legally required to file. Preparers can be penalized for fraud, negligence, or misconduct, but that has zero effect on your obligation. If returns weren't filed, they’re still considered delinquent regardless of who caused the delay.

Even so, the IRS rarely jumps straight to aggressive action for late filers unless the income was high and the years were ignored. The agency’s first move is usually a notice that gives you time to respond. That buys breathing room, especially if the missing returns are straightforward W-2 or 1099 filings. The goal now is to get ahead of the IRS rather than wait for their version of your income to surface.

Who The IRS Holds Responsible (And It’s Not Your Accountant)Nataliya Vaitkevich, Pexels

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Late-Filing Penalties You Might Face

The typical charge is the failure-to-file penalty, which runs at 5 percent of the unpaid tax per month, capped at 25 percent. Then there’s the failure-to-pay penalty, smaller at 0.5 percent per month, but still applied. Interest compounds daily. If you were owed refunds, though, the penalty disappears because penalties apply only when tax is due.

That refund detail helps soften the shock. When refunds are involved, filing late doesn’t punish you financially—although you lose the refund permanently once the return is more than three years overdue. For many people who discover missing filings, this “statute of refund expiration” ends up being the biggest loss. That’s why acting now matters more than waiting for the dust to settle.

How To Correct The Situation (And Protect Yourself)

You won’t need to file every missing year back to infinity. The IRS typically requires the most recent six years for compliance, but they often request fewer when income was modest and there’s no sign of intent to evade. For a three-year lapse, filing those returns is usually enough to restore good standing.

Even better, the IRS offers First-Time Penalty Abatement when you have a clean history for the previous three years. If you qualify, the failure-to-file penalty for one year can be waived. For the others, reasonable cause relief may apply—especially when you relied on a professional who misrepresented the status of your filings. Documentation helps here: emails, invoices, messages, or proof of timely submission of documents to the preparer.

Once the returns are complete, the IRS will calculate the balance and set up arrangements if needed. The agency’s installment agreements are far more flexible than people expect, more so if you come forward voluntarily. And voluntary compliance looks much better than waiting for an automated notice to force the issue.

How To Correct The Situation (And Protect Yourself)Vitaly Gariev, Pexels

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When Your Accountant Is Actually At Fault

If you can prove misconduct—falsifying filing confirmations, withholding documents, ignoring instructions—you may have grounds for a complaint with the preparer oversight office or state licensing board. Professional penalties target the preparer, not you, but they create a record that helps justify penalty relief requests.

These steps won’t erase your filing duties, yet they show the IRS you acted in good faith. That matters. The agency cares about behavior more than blame. People who respond quickly get far gentler treatment than those who let unopened envelopes stack up on the kitchen table.

The Smartest Next Move

Gather your income documents, pull IRS transcripts for the missing years, and get a reputable professional to reconstruct each return. Once you see the full picture—refunds, balances, credits—you’ll know what comes next. These filings can clear your record faster than you expect.

The Smartest Next MoveKampus Production, Pexels

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